Indian Institute of Technology Kharagpur |

Journal

Molecular Docking and Transgenic Expression Unveil the Role of Rice Seed-Specific Oleosin OsOle1 in Lipid Accumulation and Lipid Droplet Enlargement by Bhattacharya P., Bhattacharje G., Hansda A., Das A.K., Mukherjee G., Maiti M.K. Plant Molecular Biology Reporter 43 227-243 (2025)
Molecular dynamics simulation shows enhanced stability in scaffold-based macromolecule, designed by protein engineering: a novel methodology adapted for converting Mtb Ag85A to a multi-epitope vaccine by Hazra D., Rahman S., Ganguly M., Das A.K., Roychowdhury A. Journal of Molecular Modeling 31 - (2025)
Metronidazole Activation by a Deeply Entangled Dimeric Malic Enzyme in Entamoeba histolytica by Chakrabarty A., Dutta D., Baidya M., Dutta A., Das A.K., Ghosh S.K. Pathogens 14 - (2025)
Metronidazole Activation by a Deeply Entangled Dimeric Malic Enzyme in Entamoeba histolytica. Pathogens by Chakrabarty A., Dutta D. , Baidya M. , Dutta A. , Das A. K., Ghosh S. K. Pathogens 14 277- (2025)
Deciphering the conformational stability of MazE7 antitoxin in Mycobacterium tuberculosis from molecular dynamics simulation study by Saha R., Bhattacharje G., De S., Das A.K. Journal of Biomolecular Structure and Dynamics 43 127-143 (2025)
pH-induced fluorescent active sodium alginate-based ionically conjugated and REDOX responsive multi-functional microgels for the anticancer drug delivery by Shee M., Banerjee S. L., Dey A. , Jana I. D., Basak P. , Mandal M. , Mondal A. , Das A. K., Das N. C. International Journal of Pharmaceutics 662 124490- (2024)
Deciphering the mannose transfer mechanism of mycobacterial PimE by molecular dynamics simulations by Bhattacharje G., Ghosh A., Das A.K. Glycobiology 34 - (2024)
Deciphering the mannose transfer mechanism of mycobacterial PimE by molecular dynamics simulations by Bhattacharje G., Ghosh A. , Das A. K. Glycobiology 34 cwad096- (2024)
Effect of graphene nanoplatelets and nano zinc oxide on gas barrier and antibacterial properties of thermoplastic nanocomposites by Ghosh S.K., Ganguly S.S., Paul S., Ghosh T., Das A.K., Das N.C. Polymer Engineering and Science 64 4181-4195 (2024)
A putative mycobacterial GDP-mannose dependent a-mannosyltransferase Rv0225 acts as PimC: an in-silico study by Bhattacharje G., Ghosh A. , Das A. K. Journal of Biomolecular Structure and Dynamics 1-21 (2024)
A putative mycobacterial GDP-mannose dependent -mannosyltransferase Rv0225 acts as PimC: an in-silico study by Bhattacharje G., Ghosh A., Das A.K. Journal of Biomolecular Structure and Dynamics - (2024)
Machine learning for the advancement of genome-scale metabolic modeling by Kundu P., Beura S., Mondal S., Das A.K., Ghosh A. Biotechnology Advances 74 - (2024)
Machine learning for the advancement of genome-scale metabolic modeling by Kundu P., Beura S. , Mondal S. , Das A. K., Ghosh A. Biotechnology Advances 74 108400- (2024)
Folic acid conjugated sodium alginate based redox responsive smart functional microgels as a potential targeted anticancer drug carrier by Shee M., Banerjee S.L., Dey A., Basak P., Mandal M., Das A.K., Das N.C. Journal of Drug Delivery Science and Technology 102 - (2024)
Folic Acid Conjugated Sodium Alginate based Redox Responsive Smart Functional Microgels As A Potential Targeted Anticancer Drug Carrier by Shee M., Banerjee S. L., Dey A. , Basak P. , Mandal M. , Das A. K., Das N. C. Journal of Drug Delivery Science and Technology 102 106372- (2024)
Protocol for genome-scale differential flux analysis to interrogate metabolic differences from gene expression data by Beura S., Das A. K., Ghosh A. STAR Protocols 5 103291- (2024)
Protocol for genome-scale differential flux analysis to interrogate metabolic differences from gene expression data by Beura S., Das A.K., Ghosh A. STAR Protocols 5 - (2024)
Putative staphylococcal enterotoxin possesses two common structural motifs for MHC-II binding by Rahman S., Saha S., Dasgupta S.B., Das A.K. International Journal of Biological Macromolecules 256 - (2024)
In silico and in vitro characterization of the mycobacterial protein Ku to unravel its role in non-homologous end-joining DNA repair by Baral J., Bhattacharje G., Dash S., Samanta D., Hinde E., Rouiller I., Das A.K. International Journal of Biological Macromolecules 278 - (2024)
Genome-scale community modelling elucidates the metabolic interaction in Indian type-2 diabetic gut microbiota by Beura S., Kundu P., Das A.K., Ghosh A. Scientific Reports 14 - (2024)
Genome-scale community modelling elucidates the metabolic interaction in Indian type-2 diabetic gut microbiota by Beura S., Kundu P. , Das A. K., Ghosh A. Scientific Reports 14 17259- (2024)
Crystal structure of a thiolase from Archaeal Pyrococcus furiosus and its in silico functional annotation by Singh R., Mishra V.K., Das A.K. Biochemical and Biophysical Research Communications 693 - (2024)
Exploring staphylococcal superantigens to design a potential multi-epitope vaccine against Staphylococcus aureus: an in-silico reverse vaccinology approach by Rahman S., Sarkar K., Das A.K. Journal of Biomolecular Structure and Dynamics - (2023)
Crystal structure of a mycobacterial secretory protein Rv0398c and in silico prediction of its export pathway by Saha R., Mukherjee S. , Singh B. , De S. , Weiss M. S., Das A. K. Biochemical and Biophysical Research Communications 672 45-53 (2023)
Deciphering the conformational stability of MazE7 antitoxin in Mycobacterium tuberculosis from molecular dynamics simulation study by Saha R., Bhattacharje G. , De S. , Das A. K. Journal of Biomolecular Structure and Dynamics - (2023)
Identification of potential inhibitors against FemX of Staphylococcus aureus: A hierarchial in-silico drug repurposing approach by Rahman S., Rajak K., Mishra S., Das A.K. Journal of Molecular Graphics and Modelling 115 - (2022)
A subtractive proteomics and immunoinformatics approach towards designing a potential multi-epitope vaccine against pathogenic Listeria monocytogenes by Rahman S., Das A.K. Microbial Pathogenesis 172 - (2022)
Importance Performance Analysis to assess community role in solid waste management in the Hooghly District, West Bengal by Das A.K., Mukherjee J., Chatterjee U. Innovative Infrastructure Solutions 7 - (2022)
Fluorescently labelled thioacetazone for detecting the interaction with Mycobacterium dehydratases HadAB and HadBC by Singh B.K., Singha M., Basak S., Biswas R., Das A.K., Basak A. Organic and Biomolecular Chemistry 20 1444-1452 (2022)
Metagenome-scale community metabolic modelling for understanding the role of gut microbiota in human health by Beura S., Kundu P. , Das A. K., Ghosh A. Computers in Biology and Medicine 149 105997- (2022)
Understanding the Mannose Transfer Mechanism of Mycobacterial Phosphatidyl-myo-inositol Mannosyltransferase A from Molecular Dynamics Simulations by Bhattacharje G., Ghosh A., Das A.K. ACS Omega 7 19288-19304 (2022)
In-silico identification of critical residues in the mannose-transfer mechanism of phosphatidyl-myo-inositol mannosyltransferase B by Bhattacharje G., Ghosh A., Das A.K. Biochemical and Biophysical Research Communications 621 14-19 (2022)
In-silico screening and in-vitro assay show the antiviral effect of Indomethacin against SARS-CoV-2 by Chakraborty R., Bhattacharje G. , Baral J. , Manna B. , Mullick J. , Mathapati B. S., Abraham P. , J M. , Hasija Y. , Ghosh A. , Das A. K. Computers in Biology and Medicine 147 105788- (2022)
Targeting an evolutionarily conserved E-L-L motif in the spike protein to develop a small molecule fusion inhibitor against SARS-CoV-2 by Das Jana I., Bhattacharya P. , Mayilsamy K. , Banerjee S. , Bhattacharje G. , Das S. , Aditya S. , Ghosh A. , Mcgill A. R., Srikrishnan S. , Das A. K., Basak A. , Mohapatra S. S., Chandran B. , Bhimsaria D. , Mohapatra S. , Roy A. , Mondal A. PNAS Nexus 1 - (2022)
Mycobacterium tuberculosis low molecular weight T-cell antigen Mtb8.4 has heme-binding and fiber-forming properties by Singh R., Kundu P., Bhattacharje G., Das A.K. FEBS Letters 596 2678-2695 (2022)
Mycobactin Analogues with Excellent Pharmacokinetic Profile Demonstrate Potent Antitubercular Specific Activity and Exceptional Efflux Pump Inhibition by Shyam M., Verma H., Bhattacharje G., Mukherjee P., Singh S., Kamilya S., Jalani P., Das S., Dasgupta A., Mondal A., Das A.K., Singh A., Brucoli F., Bagnéris C., Dickman R., Basavanakatti V.N., Naresh Babu P., Sankaran V., Dev A., Sinha B.N., Bhakta S., Jayaprakash V. Journal of Medicinal Chemistry 65 234-256 (2022)
Characterization of an alcohol acetyltransferase GcAAT responsible for the production of antifungal volatile esters in endophytic Geotrichum candidum PF005 by Mitra M., Singh R. , Ghissing U. , Das A. K., Mitra A. , Maiti M. K. Microbiological Research 260 - (2022)
The C-terminal end of mycobacterial HadBC regulates AcpM interaction during the FAS-II pathway: a structural perspective by Singh B.K., Biswas R., Bhattacharyya S., Basak A., Das A.K. FEBS Journal - (2022)
High-resolution crystal structure of LpqH, an immunomodulatory surface lipoprotein of Mycobacterium tuberculosis reveals a distinct fold and a conserved cleft on its surface by Chatterjee S., Kundapura S.V., Basak A.J., Mukherjee D., Dash S., Ganguli N., Das A.K., Mukherjee G., Samanta D., Ramagopal U.A. International Journal of Biological Macromolecules 210 494-503 (2022)
A.Copper Nanoparticle Graphene Composite-Based Transparent Surface Coating with Antiviral Activity against Influenza Virus by Das I. J., Kumbhakar P. , Banerjee S. , Gowda C. C., Kedia N. , Kuila S. K., Banerjee S. , Das N. C., Das A. K., Manna I. , Tiwary C. S., Mondal A. ACS Appl Nano Mater 4 352-362 (2021)
Silver Nanodot Decorated Dendritic Copper Foam As a Hydrophobic and Mechano-Chemo Bactericidal Surface by Subhadarshini S., Singh R., Mandal A., Roy S., Mandal S., Mallik S., Goswami D.K., Das A.K., Das N.C. Langmuir 37 9356-9370 (2021)
Dual Functionalized Injectable Hybrid Extracellular Matrix Hydrogel for Burn Wounds by Bankoti K., Rameshbabu A.P., Datta S., Goswami P., Roy M., Das D., Ghosh S.K., Das A.K., Mitra A., Pal S., Maulik D., Su B., Ghosh P., Basu B., Dhara S. Biomacromolecules 22 514-533 (2021)
Label-Free Method Development for Hydroxyproline PTM Mapping in Human Plasma Proteome by Dutta D., Rahman S., Bhattacharje G., Bag S., Sing B.C., Chatterjee J., Basak A., Das A.K. Protein Journal - (2021)
Mycobacterial crypto-AcpM as a tool to investigate the consequence of drug binding on its key FAS II partner enzyme HadAB by Singh B.K., Biswas R., Basak A., Das A.K. Biochimica et Biophysica Acta - General Subjects 1865 - (2021)
Residues at the interface between zinc binding and winged helix domains of human RECQ1 play a significant role in DNA strand annealing activity. by Mukhopadhyay S., Das T. , Bose M. , Jain C. K., Chakraborty M. , Mukherjee S. , Shikha K. , Das A. K., Ganguly A. Nucleic Acids Research 49 11834-11854 (2021)
Decellularized bone matrix/oleoyl chitosan derived supramolecular injectable hydrogel promotes efficient bone integration by Datta S., Rameshbabu A. P., Bankoti K. , Roy M. , Gupta C. , Jana S. , Das A. K., Sen R. , Dhara S. Materials Science and Engineering: C 119 - (2021)
Integrated Multi-omics, Virtual Screening and Molecular Docking Analysis of Methicillin-Resistant Staphylococcus aureus USA300 for the Identification of Potential Therapeutic Targets: An In-Silico Approach by Rahman S., Das A.K. International Journal of Peptide Research and Therapeutics 27 2735-2755 (2021)
Biochemical Characterization of VapC46 Toxin from Mycobacterium tuberculosis by Roy M., Bose M. , Bankoti K. , Kundu A. , Dhara S. , Das A. K. Molecular Biotechnology 62 335-343 (2020)
Acoustic cavitation assisted destratified clay tactoid reinforced in situ elastomer-mimetic semi-IPN hydrogel for catalytic and bactericidal application by Ganguly S., Das P. , Das T. K., Ghosh S. , Das S. , Bose M. , Mandal M. , Das A. K., Das N. C. Ultrasonics Sonochemistry 60 104797- (2020)
Development of a copper-graphene nanocomposite based transparent coating with antiviral activity against influenza virus by Das Jana I., Kumbhakar P. , Banerjee S. , Chowde Gowda C. , Kedia N. , Kuila S. K., Banerjee S. , Das N. C., Das A. K., Manna I. , Tiwary C. S., Mondal A. BioRxiv - (2020)
Characterization of two sugar transporters responsible for efficient xylose uptake in anoleaginous yeast Candida tropicalis SY005 by Chattopadhyay A., Singh R. , Das A. K., Maiti M. K. Arch Biochem Biophys 695 - (2020)
Combination of QSAR, molecular docking, molecular dynamic simulation and MM-PBSA: analogues of lopinavir and favipiravir as potential drug candidates against COVID-19 by Rafi M. O., Bhattacharjee G. , Khapaii K. , Tok T. T., Alfasane M. A., Das A. K., Parvez M. A., Rahman M. S. Journal of Biomolecular Structure and Dynamics. 30 1-20 (2020)
Staphylococcal superantigen-like proteins interact with human MAP kinase signaling protein ERK2 by Dutta D., Mukherjee D. , Mukherjee I. , Maiti T. K., Basak A. , Das A. K. FEBS Lett 594 266-277 (2020)
Identification and functional characterization of a lipid droplet protein CtLDP1 from an oleaginous yeast Candida tropicalis SY005 by Chattopadhyay A., Singh R. , Mitra M. , Das A. K., Maiti M. K. Biochim. Biophys. Acta - Mol. Cell Biol. Lipids 1865 - (2020)
Elucidation of the mechanism of disulfide exchange between staphylococcal thioredoxin2 and thioredoxin reductase2: A structural insight. by Bose M., Bhattacharyya S. , Biswas R. , Roychowdhury A. , Bhattacharjee A. , Ghosh A. K., Das A. K. Biochimie 160 01-13 (2019)
Garratt-Braverman cyclization route towards the synthesis of phenanthridinederivatives and their DNA-binding studies by Basak A., Das A. K., Mandal A. , Bhattacharya P. Tetrahedron 75 1975-1987 (2019)
Gradient crystallinity and its influence on the poly(vinylidene fluoride)/poly(methyl methacrylate) membrane derived by immersion precipitation method by Remanan S., Ghosh S. , Das T. K., Sharma M. , Bose M. , Bose S. , Das A. K., Das N. C. Journal of Applied Polymer Science 137 48677- (2019)
Microwave assisted green synthesis of Zwitterionic photolumenescent N-doped carbon dots: an efficient on-off chemosensor for tracer Cr (+ 6) considering the inner filter effect and nano drug-delivery vector by Ganguly S., Das P. , Das S. , Ghorai U. , Bose M. , Ghosh S. , Mandal M. , Das A. K., Banerjee S. , Das N. C. Colloids and Surfaces A: Physicochemical and Engineering Aspects 579 123604- (2019)
Converting waste Allium sativum peel to nitrogen and sulphur co-doped photoluminescence carbon dots for solar conversion, cell labeling, and photobleaching diligences: A path from discarded waste to value-added products by Das N. C., Das A. K., Banerjee S. , Bandyopadhyay S. Journal of Photochemistry and Photobiology B: Biology 197 111545- (2019)
Isolation and mass spectrometry based hydroxyproline mapping of type II collagen derived from Capra hircus ear cartilage by Maity P. P., Dutta D. , Ganguly S. , Kapat K. , Dixit, K. , Roy Chowdhury A. , Samanta R. , Das N. C., Datta P. , Das A. K., Dhara S. Communications Biology 2 146- (2019)
3D Enhanced, High Performing, Super hydrophobic and Electromagnetic Interference Shielding Fabrics Based on Silver Paint and Their Use in Antibacterial Applications by Ghosh S., Das P. , Ganguly S. , Remanan S. , Das T. K., Bhattacharyya S. K., Baral J. , Das A. K., Laha T. , Das N. C. Chemistry Select 4 11748-11754 (2019)
Biocompatible carbon dots derived from Îº-carrageenan and phenyl boronic acid for dual modality sensing platform of sugar and its anti-diabetic drug release behavior by Das P., Maity P.P., Ganguly S., Ghosh S., Baral J., Bose M., Choudhary S., Gangopadhyay S., Dhara S., Das A.K., Banerjee S., Das N.C. International Journal of Biological Macromolecules 132 316-329 (2019)
Structural characterization of VapB46 antitoxin from Mycobacterium tuberculosis: insights into VapB46 DNA binding by Roy M., Kundu A. , Bhunia A. , Das Gupta S. , De S. , Das A. K. The FEBS journal 286 1174-1190 (2019)
Naphthalimide-Based Template for Inhibitor Screening via Cross-Linking and In-Gel Fluorescence: A Case Study against HCA II by Singha M., Roy S., Moirangthem R., Das A.K., Basak A. ACS Omega 4 11914-11920 (2019)
Decrypting the oscillating nature of the 4 -phosphopantetheine arm in acyl carrier protein AcpM of Mycobacterium tuberculosis. by Biswas R., Singh B. K., Dutta D. , Das P. K., Maiti M. K., Basak A. , Das A. K. FEBS Lett. 593 622-633 (2019)
Acoustic cavitation assisted destratified clay tactoid reinforced in situ elastomer-mimetic semi-IPN hydrogel for catalytic and bactericidal application by Ganguly S., Das P. , Das T. K., Ghosh S. , Das S. , Bose M. , Mandal M. , Das A. K., Das N. C. Ultrasonics Sonochemistry 60 104797- (2019)
Fabrication of Reduced Graphene Oxide/Silver Nanoparticles Decorated Conductive Cotton Fabric for High Performing Electromagnetic Interference Shielding and Antibacterial Application by Ghosh S., Ganguly S., Das P., Das T.K., Bose M., Singha N.K., Das A.K., Das N.C. Fibers and Polymers 20 1161-1171 (2019)
Surface quaternized nanosensor as a one-arrow-two-hawks approach for fluorescence turn â on-off-onâ bifunctional sensing and antibacterial activity by Das P., Ganguly S., Bose M., Ray D., Ghosh S., Mondal S., Aswal V.K., Das A.K., Banerjee S., Das N.C. New Journal of Chemistry 43 6205-6219 (2019)
A Garratt-Braverman cyclization route towards the synthesis of phenanthridine derivatives and their DNA-binding studies, by Mandal A., Bhattacharya P. , Das A. K., Basak A. Tetrahedron 75 1975-1987 (2019)
Preparation and characterization of a unique low cost microfiltration membrane from a technologically compatible poly (ethylene co methyl acrylate)/poly (vinylidene fluoride) blend for water filtration application by Remanan S., Bose M. , Das A. K., Das N. C. Journal of Applied Polymer Science 136 47218-47233 (2019)
Electrodeposited Cu2O Nanopetal Architecture as a Superhydrophobic and Antibacterial Surface by Subhadarshini S., Singh R. , Goswami D. K., Das A. K., Das N. C. Langmuir 35 17166-17176 (2019)
Probing the inhibitory potency of epigallocatechin gallate against human Î³B-crystallin aggregation: Spectroscopic, microscopic and simulation studies by Chaudhury S., Dutta A., Bag S., Biswas P., Das A.K., Dasgupta S. Spectrochimica Acta - Part A: Molecular and Biomolecular Spectroscopy 192 318-327 (2018)
Identification of -enolase as a prognostic and diagnostic precancer biomarker in oral submucous fibrosis. by Bag S., Dutta D. , Chaudhary A. , Singh B. C., Pal M. , Ray A. K., Banerjee R. , Paul R. R., Basak A. , Das A. K., Chatterjee J. J. Clin. Path. 71 228-238 (2018)
One Step Synthesis of Fluorescent Carbon Dots for Bio Labeling Assay by Das P., Bose M. , Das A. K., Banerjee S. , Das N. C. Macromolecular Symposia 382 1800077- (2018)
Rice matrix metalloproteinase OsMMP1 plays pleiotropic roles in plant development and symplastic-apoplastic transport by modulating cellulose and callose depositions by Das P. K., Biswas R. , Anjun N. , Das A. K., Maiti M. K. Sci Rep 8 2783- (2018)
Modulation of collagen population under honey assisted wound healing in diabetic rat model by Sarkar S., Chaudhary A., Saha T.K., Das A.K., Chatterjee J. Wound Medicine 20 7-17 (2018)
Domain swapping between FabGs deciphers the structural determinant for in-solution oligomerization and substrate binding by Das A. K., Biswas R. , Singh B. K., Dutta D. , Basak A. Biophysical Chemistry 237 9-21 (2018)
Multi-nucleated cells use ROS to induce breast cancer chemo-resistance in vitro and in vivo by Das A. K., Parekh A. , Das S. , Parida S. , Das C. K., Dutta D. , Mallick S. K., Wu P. , Kumar B. , Bharti R. , Dey G. , Banerjee K. , Rajput S. , Bharadwaj D. , Pal I. , Dey K. K., Rajesh Y. , Jena B. C., Biswas A. , Banik P. , Pradhan A. K., Das S. K., Dhara S. , Fisher P. B., Wirtz D. , Mills G. B., Mandal M. Oncogene 37 4546-4561 (2018)
Synthesis of furan-fused 1,4-dihydrocarbazoles via an unusual Garratt-Braverman Cyclization of indolyl propargyl ethers and their antifungal activity by Mandal A., Mandal S.M., Jana S., Bag S.S., Das A.K., Basak A. Tetrahedron 74 3543-3556 (2018)
Waste chimney oil to nanolights: A low cost chemosensor for tracer metal detection in practical field and its polymer composite for multidimensional activity. by Das P., Ganguly S. , Maity P. P., Bose M. , Mondal S. , Dhara S. , Das A. K., Banerjee S. , Das N. C. J. Photochem. Photobiol. B 180 56-67 (2018)
Heteroatom doped photoluminescent carbon dots for sensitive detection of acetone in human fluids by Das P., Ganguly S., Mondal S., Bose M., Das A.K., Banerjee S., Das N.C. Sensors and Actuators, B: Chemical 266 583-593 (2018)
Natural saponin stabilized nano-catalyst as efficient dye-degradation catalyst by Ganguly S., Mondal S., Das P., Bhawal P., Das T.K., Bose M., Choudhary S., Gangopadhyay S., Das A.K., Das N.C. Nano-Structures and Nano-Objects 16 86-95 (2018)
Zinc and nitrogen ornamented bluish white luminescent carbon dots for engrossing bacteriostatic activity and Fenton based bio-sensor by Das P., Ganguly S., Bose M., Mondal S., Choudhary S., Gangopadhyay S., Das A.K., Banerjee S., Das N.C. Materials Science and Engineering C 88 115-129 (2018)
Strongly blue-luminescent N-doped carbogenic dots as a tracer metal sensing probe in aqueous medium and its potential activity towards in situ Ag-nanoparticle synthesis by Das N. C., Ganguly S. , Das P. , Bose M. , Mondal S. , Das A. K. Sensors and Actuators B: Chemical 252 735-746 (2017)
Green approach to photoluminescent carbon dots for imaging of gram-negative bacteria Escherichia coli by Das P., Bose M. , Ganguly S. , Mondal S. , Das A. K., Banerjee S. , Das N. C. Nanotechnology 28 55501-55512 (2017)
Enediyne-based protein capture agents: demonstration of an enediyne moiety acting as a photoaffinity label by Das J., Roy S. , Halnor S. , Das A. K., Basak A. Org Biomol Chem. 15 1122-1129 (2017)
A simplistic approach to green future with eco-friendly luminescent carbon dots and their application to fluorescent nano-sensor turn-off probe for selective sensing of copper ions by Das P., Ganguly S. , Bose M. , Mondal S. , Das A. K., Banerjee S. , Das N. C. Materials Science and Engineering: C 75 1456-1464 (2017)
Design and synthesis of dual probes for detection of metal ions by LALDI MS and fluorescence: application in Zn(II) imaging in cells by Mandal A., Maity A. , Bag S. , Bhattacharya P. , Das A. K., Basak A. RSC Adv 7 7163-7169 (2017)
The 1 1 region is crucial for biofilm enhancement activity of MTC28 in Mycobacterium smegmatis. by Kundu P., Dutta D. , Das A. K. FEBS Lett. 591 3333-3347 (2017)
Identification of -enolase as a prognostic and diagnostic precancer biomarker in oral sub-mucous fibrosis by Bag S., Dutta D. , Chaudhary A. , Sing B. C., Pal M. , Ray A. K., Banerjee R. , Paul R. R., Basak A. , Das A. K., Chatterjee J. Journal of Clinical Pathology - (2017)
Therapeutic interfaces of honey in diabetic wound pathology by Sarkar S., Mukhopadhyay A. , Chaudhary A. , Rajput M. , Pawar H. S., Mukherjee R. , Das A. K., Banerjee P. , Chatterjee J. Wound Medicine 18 21-32 (2017)
Molecular insights into RNA-binding properties of the Escherichia coli-expressed RNA-dependent RNA polymerase of Antheraea mylitta cytoplasmic polyhedrosis virus by Kundu A., Bose M. , Roy M. , Dutta S. , Biswas P. , Goutam P. , Das A. K., Ghosh A. K. Archives of Virology 162 2727-2736 (2017)
A new rhodamine derived fluorescent sensor: Detection of Hg2+ at cellular level by Sarkar N., Kuchlyan J. , Basak S. , Dutta D. , Das A. K., Mal D. Chem. Phys. Lett. 673 84-88 (2017)
Sonochemical green reduction to prepare Ag nanoparticles decorated graphene sheets for catalytic performance and antibacterial application. by Ganguly S., Das P. , Bose M. , Das T. K., Mondal S. , Das A. K., Das N. C. Ultrason. Sonochem 39 577-588 (2017)
NanoLC MALDI MS/MS based quantitative metabolomics reveals the alteration of membrane biogenesis in oral cancer by Bag S., Dutta D. , Chaudhury A. , Singh B. C., Banerjee R. , Pal M. , Paul R. R., Basak A. , Das A. K., Ray A. K., Chatterjee J. RSC Advance 62420-62433 (2016)
NanoLC MALDI MS/MS based quantitative metabolomics reveals the alteration of membrane biogenesis in oral cancer by Bag S., Dutta D. , Chaudhary A. , Sing B. C., Banerjee R. , Pal M. , Paul R. R., Basak A. , Das A. K., Ray A. K., Chatterjee J. RSC Advances 6 62420-62433 (2016)
Disruption of redox catalytic functions of peroxiredoxin-thioredoxin complex in Mycobacterium tuberculosis H37Rv using small interface binding molecules by Gurung A. B., Das A. K., Bhattacherjee A. Comput Biol Chem 69-83 (2016)
Protection of human gamma B-crystallin from UV-induced damage by epigallocatechin gallate: spectroscopic and docking studies by Chaudhury S., Bag S. , Bose M. , Das A. K., Ghosh A. K., Dasgupta S. Mol Biosyst 12 2901-2909 (2016)
Protection of human gamma B-crystallin from UV induced damage by Epigallocatechin gallate: Spectroscopic and docking studies by Chaudhury S., Bag S. , Bose M. , Das A. K., Ghosh A. K., Dasgupta S. Mol. BioSyst. 12 2901-2909 (2016)
Structural elucidation of the NADP(H) phosphatase activity of staphylococcal dual-specific IMPase/NADP(H) phosphatase. by 10. Bhattacharyya S, Dutta A, Dutta D, Ghosh A. K., Das A. K. Acta Crystallogr D 72 281-290 (2016)
Structure-based epitope mapping of Mycobacterium tuberculosis secretary antigen MTC28 by Kundu P, Biswas R, Mukherjee S, Reinhard L, Dutta A, Mueller-Dieckmann J, Weiss M S, Pal N K and Das A K J Biol Chem. 291 13943-13954 (2016)
Reconstitution of the RNA- dependent RNA polymerase activity of Antheraea mylitta cypovirus in vitro using separately expressed different functional domains of the enzyme by Kundu A., Roychowdhury A. , Bose M. , Ghosh A. K., Das A. K. J Gen Virol. - (2016)
Reconstitution of the RNAdependent RNA polymerase activity of Antheraea mylitta cypovirus in vitro using separately expressed different functional domains of the enzyme by Kundu A., Roychowdhury A. , Bose M. , Das A. K., Ghosh A. K. Journal of General Virology 97 1709-1719 (2016)
Macroscopic amyloid fiber formation by staphylococcal biofilm associated SuhB protein by Dutta A., Bhattacharyya S. , Kundu A. , Dutta D. , Das A. K. Biophys. Chem. 32-41 (2016)
Inhibition of M. tuberculosis -ketoacyl CoA reductase FabG4 (Rv0242c) by triazole linked polyphenol-aminobenzene hybrids: comparison with the corresponding gallate counterparts by Banerjee D. R., Senapati K. , Biswas R. , Das A. K., Basak A. Bioorganic & Medicinal Chemistry Letters 25 1343-1347 (2015)
Complete catalytic cycle of cofactor-independent phosphoglycerate mutase involves a spring-loaded mechanism by Roychowdhury A., Kundu A. , Bose M. , Gujar A. , Mukherjee S. , Das A. K. FEBS Journal 282 1097-1110 (2015)
Crystal structure of dehydratase component HadAB complex of mycobacterial FAS-II pathway. by 7. Biswas R; Dutta A; Dutta D; Hazra D; Banerjee D R; Basak A; Das A K. BBRC 458 369-374 (2015)
Label-assisted laser desorption/ionization mass spectrometry (LA-LDI-MS): use of pyrene aldehyde for detection of biogenic amines, amino acids and peptides by Mandal A., Das A. K., Basak A. RSC Advances 5 106912-106917 (2015)
Design, synthesis and characterization of dual inhibitors against new targets FabG4 and HtdX of Mycobacterium tuberculosis by Banerjee D. R., Biswas R. , Das A. K., Basak A. European Journal of Medicinal Chemistry 100 223-234 (2015)
Functional insights from molecular modeling, docking and dynamics study of a cypoviral RNA dependent RNA polymerase. by Kundu .., Dutta A. , Biswas P. , Das A. K., Ghosh A. K. Journal of Molecular Graphics and Modelling 61 160-174 (2015)
Structural elucidation of the binding site and mode of inhibition of Li+ and Mg2+ in inositol monophosphatase. by 8. Dutta A; Bhattacharyya S; Dutta D; Das AK. FEBS J 281 5309-5324 (2015)
NMR ((1)H and (13)C) based signatures of abnormal choline metabolism in oral squamous cell carcinoma with no prominent Warburg effect by Bag S., Banerjee D. R., Basak A. , Das A. K., Pal M. , Paul R. R., Chatterjee J. Biochemical and Biophysical Research Communications 459 574-578 (2015)
Crystal structure of Hexanoyl-CoA bound to β-ketoacyl reductase FabG4 of Mycobacterium tuberculosis. by 6. Dutta D, Bhattacharyya S, Roychowdhury A, Biswas R and Das AK. Biochem. J. 450 127-139 (2013)
Crystal structure of glyceraldehyde-3-phosphate dehydrogenase 1 from methicillin-resistant Staphylococcus aureus MRSA252 provides novel insights into substrate binding and catalytic mechanism. by 5. Mukherjee S., Dutta D., Saha B., Das A. K. J Mol Biol. 401 949-968 (2010)
Crystal Structure of Low-Molecular-Weight Protein Tyrosine Phosphatase from Mycobacterium tuberculosis at 1.9-Å Resolution by 4. Madhurantakam C., Rajakumara E., Mazumdar P. A., Saha B., Mitra D., Wiker H.G., Sankaranarayanan R., Das A. K. J. Bacteriol 187 2175-2181 (2005)
Molecular Modeling of RecX Reveals its Mode of Interaction with RecA. by Mishra S., Majumdar P. A., Dey J. , Das A. K. Biochem. Biophys. Res. Com. 312 615-622 (2003)
The crystal structure of Human Eukaryotic Release factor eRF1 - Mechanism of stop codon recognition and peptidyl-tRNA hydrolysis by 3. Song H., Mugnier P., Das A. K., Webb H.M., Evans D. R., Tuite M. F., Hemmings B. A., Barford D. CELL 100 311-321 (2000)
The structure of the tetratricopeptide repeats of PP5 - Implications for TPR-mediated protein-protein interactions by 2. Das A. K., Cohen P. T. W., Barford D. EMBO J. 17 1192-1199 (1998)
Crystal structure of the protein serine/threonine phosphatase 2C at 2.0A resolution by 1. Das A. K., Helps N. R., Cohen P. T. W., Barford D. EMBO J. 15 6798-6809 (1996)

Patent

process for production of bioactive oligosaccharides from extremophilic fungus by Das A. K. - (2024)

Conferences

Elucidating Metabolic Interactions in the Gut Microbiota of Type 2 Diabetic Patient by Beura S., Das A. K., Ghosh A. ISCB-Latin America SoIBio CCBCOL International Conference on Bioinformatics 2024 - (2024)
Reconstruction and analysis of Tissue-specific Genome-scale Metabolic Model using RNA Sequencing data by Beura S., Das A. K., Ghosh A. BioEngineering Conference (BEC)- 2024 - (2024)
1. Alteration in the winged helix domain dynamics affects substrate binding and unwinding activity of human RECQ1 by Das T., Mukhopadhyay S. , Das A. K., Ganguly A. Helicase and Nucleic acid based machines - (2023)
Structural insight into conformational requirement of RecQ C-terminal domain for strand annealing activity of human RecQ1 by Das T., Mukhopadhyay S. , Bose M. , Das A. K., Ganguly A. The helicase and nucleic acid based machine conference - (2019)
One-step green synthesis of fluorescent carbon dots from biowaste for bio-labeling assay by Das P., Bose M. , Das A. K., Banerjee S. , Das N. C. 25th Annual World Forum on Advanced Materials (POLYCHAR 25) in Kuala Lumpur, Malaysia - (2017)

Book Chapter/Section

Hydrogel Based Chemical Sensors by Shee M., Basak P. , Das A. K., Das N. C. Materials for Chemical Sensors 75-95 (2023)
Nuclear Magnetic Resonance Spectroscopy to Analyse Protein Folding and Dynamics by Saibo N., Boral S. , Saha R. , Das A. K., De S. Protein Folding Dynamics and Stability 61-81 (2023)
Nuclear Magnetic Resonance Spectroscopy to Analyse Protein Folding and Dynamics by Saibo N.V., Boral S., Saha R., Das A.K., De S. Protein Folding Dynamics and Stability: Experimental and Computational Methods 61-81 (2023)

Symposium

Molecular mechanism of polymerase activity and RNA binding properties of E. coli expressed different domains of Antheraea mylitta cytoplasmic polyhedrosis virus RNA dependent RNA polymerase. by Kundu A., Das A. K., Ghosh A. K. 13th International double-stranded RNA virus symposium - (2018)
The Structures of Mycobacterial Enzymes Unclose the Artifice of N ovel Inhibitors D esigning by Das A. K. Organic Molecules: Syntheses & Applications ( OMSA) - (2017)

Workshop

Structure determination, mass spectrometry and epitope mapping of proteins by Das A. K. Refresher course (UGC) - (2017)

Seminars

The structures of mycobacterial enzymes involved in Fatty acid biosynthesis and novel inhibitors designing against Tuberculosis by Das A. K. 45th National Seminar on Crystallography (NSC45) - (2017)
Crystal structure determination and epitope mapping of Mycobacterium tuberculosis complex specific 28kDa antigen by Das A. K. National Seminar on Crystallography 2016 - (2016)